2020

Single-cell RNA counting at allele and isoform resolution using Smart-seq3
Michael Hagemann-Jensen, Christoph Ziegenhain, Ping Chen, Daniel Ramsköld, Gert-Jan Hendriks, Anton J. M. Larsson, Omid R. Faridani & Rickard Sandberg
Nature Biotechnology 2020. https://doi.org/10.1038/s41587-020-0497-0

Benchmarking single-cell RNA-sequencing protocols for cell atlas projects
Elisabetta Mereu, Atefeh Lafzi, Catia Moutinho, Christoph Ziegenhain, Davis J McCarthy, Adrián Álvarez-Varela, Eduard Batlle, Dominic Grün, Julia K Lau, Stéphane C Boutet, Chad Sanada, Aik Ooi, Robert C Jones, Kelly Kaihara, Chris Brampton, Yasha Talaga, Yohei Sasagawa, Kaori Tanaka, Tetsutaro Hayashi, Caroline Braeuning, Cornelius Fischer, Sascha Sauer, Timo Trefzer, Christian Conrad, Xian Adiconis, Lan T Nguyen, Aviv Regev, Joshua Z Levin, Swati Parekh, Aleksandar Janjic, Lucas E Wange, Johannes W Bagnoli, Wolfgang Enard, Marta Gut, Rickard Sandberg, Itoshi Nikaido, Ivo Gut, Oliver Stegle, Holger Heyn
Nature Biotechnology 2020. https://doi.org/10.1038/s41587-020-0469-4

Cell type composition and circuit organization of clonally related excitatory neurons in the juvenile mouse neocortex
Cadwell, CR; Scala, F; Fahey, PG; Kobak, D; Mulherkar, S; Sinz, FH; Papadopoulos, S; Tan, ZH; Johnsson, P; Hartmanis, L; Li, S; Cotton, RJ; Tolias, KF; Sandberg, R; Berens, P; Jiang, X; Tolias, AS
eLife, 2020

The Molecular Anatomy of Mouse Skin during Hair Growth and Rest
Joost, S; Annusver, K; Jacob, T; Sun, X; Dalessandri, T; Sivan, U; Sequeira, I; Sandberg, R; Kasper, M
Cell stem cell, 2020, 441-457.e7.

2019

Cell shape determines gene expression: cardiomyocyte morphotypic transcriptomes
Haftbaradaran Esfahani, P; ElBeck, Z; Sagasser, S; Li, X; Hossain, MB; Talukdar, HA; Sandberg, R; Knöll, R
Basic research in cardiology, 2019, 7-.

Disruption of the Extracellular Matrix Progressively Impairs Central Nervous System Vascular Maturation Downstream of β-Catenin Signaling
Jensen, LD; Hot, B; Ramsköld, D; Germano, RFV; Yokota, C; Giatrellis, S; Lauschke, VM; Hubmacher, D; Li, MX; Hupe, M; Arnold, TD; Sandberg, R; Frisén, J; Trusohamn, M; Martowicz, A; Wisniewska-Kruk, J; Nyqvist, D; Adams, RH; Apte, SS; Vanhollebeke, B; Stenman, JM; Kele, J
Arteriosclerosis, thrombosis, and vascular biology, 2019, 1432-1447.

Genomic encoding of transcriptional burst kinetics
Larsson, AJM; Johnsson, P; Hagemann-Jensen, M; Hartmanis, L; Faridani, OR; Reinius, B; Segerstolpe, Å; Rivera, CM; Ren, B; Sandberg, R
Nature, 2019, 251-254.

Intussusceptive Vascular Remodeling Precedes Pathological Neovascularization
Ali, Z; Mukwaya, A; Biesemeier, A; Ntzouni, M; Ramsköld, D; Giatrellis, S; Mammadzada, P; Cao, R; Lennikov, A; Marass, M; Gerri, C; Hildesjö, C; Taylor, M; Deng, Q; Peebo, B; Del Peso, L; Kvanta, A; Sandberg, R; Schraermeyer, U; Andre, H; Steffensen, JF; Lagali, N; Cao, Y; Kele, J; Jensen, LD
Arteriosclerosis, thrombosis, and vascular biology, 2019, 1402-1418.

Layer 4 of mouse neocortex differs in cell types and circuit organization between sensory areas
Scala, F; Kobak, D; Shan, S; Bernaerts, Y; Laturnus, S; Cadwell, CR; Hartmanis, L; Froudarakis, E; Castro, JR; Tan, ZH; Papadopoulos, S; Patel, SS; Sandberg, R; Berens, P; Jiang, XL; Tolias, AS
Nature Communications, 2019, 4174-.

NASC-seq monitors RNA synthesis in single cells
Hendriks, GJ; Jung, LA; Larsson, AJM; Lidschreiber, M; Andersson Forsman, O; Lidschreiber, K; Cramer, P; Sandberg, R
Nature communications, 2019, 3138-.

X-chromosome upregulation is driven by increased burst frequency
Larsson, AJM; Coucoravas, C; Sandberg, R; Reinius, B
Nature Structural & Molecular Biology, 2019, 963-969.

2018

Computational correction of index switching in multiplexed sequencing libraries
Larsson, AJM; Stanley, G; Sinha, R; Weissman, IL; Sandberg, R
Nature methods, 2018, 305-307.

Exploring parasite heterogeneity using single-cell RNA-seq reveals a gene signature among sexual stage Plasmodium falciparum parasites
Ngara, M; Palmkvist, M; Sagasser, S; Hjelmqvist, D; Björklund, ÅK; Wahlgren, M; Ankarklev, J; Sandberg, R
Experimental cell research, 2018, 130-138.

Identification of spatial expression trends in single-cell gene expression data
Edsgärd, D; Johnsson, P; Sandberg, R
Nature methods, 2018, 339-342.

Mouse Model of Alagille Syndrome and Mechanisms of Jagged1 Missense Mutations
Andersson, ER; Chivukula, IV; Hankeova, S; Sjöqvist, M; Tsoi, YL; Ramsköld, D; Masek, J; Elmansuri, A; Hoogendoorn, A; Vazquez, E; Storvall, H; Netušilová, J; Huch, M; Fischler, B; Ellis, E; Contreras, A; Nemeth, A; Chien, KC; Clevers, H; Sandberg, R; Bryja, V; Lendahl, U
Gastroenterology, 2018, 1080-1095.

Parental haplotype-specific single-cell transcriptomics reveal incomplete epigenetic reprogramming in human female germ cells
Vértesy, Á; Arindrarto, W; Roost, MS; Reinius, B; Torrens-Juaneda, V; Bialecka, M; Moustakas, I; Ariyurek, Y; Kuijk, E; Mei, H; Sandberg, R; van Oudenaarden, A; Chuva de Sousa Lopes, SM
Nature communications, 2018, 1873-.

Reply to 'High prevalence of clonal monoallelic expression'
Reinius, B; Sandberg, R
Nature genetics, 2018, 1199-1200.

Small-seq for single-cell small-RNA sequencing
Hagemann-Jensen, M; Abdullayev, I; Sandberg, R; Faridani, OR
Nature protocols, 2018, 2407-2424.

2017

A TRPV1-to-secretagogin regulatory axis controls pancreatic β-cell survival by modulating protein turnover
Malenczyk, K; Girach, F; Szodorai, E; Storm, P; Segerstolpe, Å; Tortoriello, G; Schnell, R; Mulder, J; Romanov, RA; Borók, E; Piscitelli, F; Di Marzo, V; Szabó, G; Sandberg, R; Kubicek, S; Lubec, G; Hökfelt, T; Wagner, L; Groop, L; Harkany, T
The EMBO journal, 2017, 2107-2125.

Multimodal profiling of single-cell morphology, electrophysiology, and gene expression using Patch-seq
Cadwell, CR; Scala, F; Li, S; Livrizzi, G; Shen, S; Sandberg, R; Jiang, X; Tolias, AS
Nature protocols, 2017, 2531-2553.

Position- and Hippo signaling-dependent plasticity during lineage segregation in the early mouse embryo
Posfai, E; Petropoulos, S; de Barros, FRO; Schell, JP; Jurisica, I; Sandberg, R; Lanner, F; Rossant, J
eLife, 2017

Q&A: using Patch-seq to profile single cells
Cadwell, CR; Sandberg, R; Jiang, X; Tolias, AS
BMC biology, 2017, 58-.

Reading and editing the Pleurodeles waltl genome reveals novel features of tetrapod regeneration
Elewa, A; Wang, H; Talavera-López, C; Joven, A; Brito, G; Kumar, A; Hameed, LS; Penrad-Mobayed, M; Yao, Z; Zamani, N; Abbas, Y; Abdullayev, I; Sandberg, R; Grabherr, M; Andersson, B; Simon, A
Nature communications, 2017, 2286-.

Single-Cell Analysis Reveals a Close Relationship between Differentiating Dopamine and Subthalamic Nucleus Neuronal Lineages
Kee, N; Volakakis, N; Kirkeby, A; Dahl, L; Storvall, H; Nolbrant, S; Lahti, L; Björklund, ÅK; Gillberg, L; Joodmardi, E; Sandberg, R; Parmar, M; Perlmann, T
Cell stem cell, 2017, 29-40.

Single-cell transcriptomics uncovers distinct molecular signatures of stem cells in chronic myeloid leukemia
Giustacchini, A; Thongjuea, S; Barkas, N; Woll, PS; Povinelli, BJ; Booth, CAG; Sopp, P; Norfo, R; Rodriguez-Meira, A; Ashley, N; Jamieson, L; Vyas, P; Anderson, K; Segerstolpe, Å; Qian, H; Olsson-Strömberg, U; Mustjoki, S; Sandberg, R; Jacobsen, SEW; Mead, AJ
Nature medicine, 2017, 692-702.

2016

Adult Human and Mouse Ovaries Lack DDX4-Expressing Functional Oogonial Stem Cells EDITORIAL COMMENT
Zhang, H; Panula, S; Petropoulos, S; Edsgard, D; Busayavalasa, K; Liu, L; Li, X; Risal, S; Shen, Y; Shao, JC; Liu, M; Li, SS; Zhang, DD; Zhang, XX; Gerner, RR; Sheikhi, M; Damdimopoulou, P; Sandberg, R; Douagi, I; Gustafsson, JA; Liu, L; Lanner, F; Hovatta, O; Liu, K
OBSTETRICAL & GYNECOLOGICAL SURVEY, 2016, 29-30.

Analysis of allelic expression patterns in clonal somatic cells by single-cell RNA-seq
Reinius, B; Mold, JE; Ramsköld, D; Deng, Q; Johnsson, P; Michaëlsson, J; Frisén, J; Sandberg, R
Nature genetics, 2016, 1430-1435.

Electrophysiological, transcriptomic and morphologic profiling of single neurons using Patch-seq
Cadwell, CR; Palasantza, A; Jiang, X; Berens, P; Deng, Q; Yilmaz, M; Reimer, J; Shen, S; Bethge, M; Tolias, KF; Sandberg, R*; Tolias, AS*
Nature biotechnology, 2016, 199-203.

Initial seeding of the embryonic thymus by immune-restricted lympho-myeloid progenitors
Luis, TC; Luc, S; Mizukami, T; Boukarabila, H; Thongjuea, S; Woll, PS; Azzoni, E; Giustacchini, A; Lutteropp, M; Bouriez-Jones, T; Vaidya, H; Mead, AJ; Atkinson, D; Böiers, C; Carrelha, J; Macaulay, IC; Patient, R; Geissmann, F; Nerlov, C; Sandberg, R; de Bruijn, MFTR; Blackburn, CC; Godin, I; Jacobsen, SEW
Nature immunology, 2016, 1424-1435.

Laser capture microscopy coupled with Smart-seq2 for precise spatial transcriptomic profiling
Nichterwitz, S; Chen, G; Aguila Benitez, J; Yilmaz, M; Storvall, H; Cao, M; Sandberg, R; Deng, Q; Hedlund, E
Nature communications, 2016, 12139-.

scphaser: haplotype inference using single-cell RNA-seq data
Edsgärd, D; Reinius, B; Sandberg, R
Bioinformatics (Oxford, England), 2016, 3038-40.

Single-cell analyses of X Chromosome inactivation dynamics and pluripotency during differentiation
Chen, G; Schell, JP; Benitez, JA; Petropoulos, S; Yilmaz, M; Reinius, B; Alekseenko, Z; Shi, L; Hedlund, E; Lanner, F; Sandberg, R; Deng, Q
Genome research, 2016, 1342-1354.

Single-Cell RNA-Seq Reveals Lineage and X Chromosome Dynamics in Human Preimplantation Embryos
Petropoulos, S; Edsgärd, D; Reinius, B; Deng, Q; Panula, SP; Codeluppi, S; Plaza Reyes, A; Linnarsson, S; Sandberg, R*; Lanner, F*
Cell, 2016, 1012-26.

Single-cell sequencing of the small-RNA transcriptome
Faridani, OR; Abdullayev, I; Hagemann-Jensen, M; Schell, JP; Lanner, F; Sandberg, R
Nature biotechnology, 2016, 1264-1266.

Single-Cell Transcriptome Profiling of Human Pancreatic Islets in Health and Type 2 Diabetes
Segerstolpe, Å; Palasantza, A; Eliasson, P; Andersson, EM; Andréasson, AC; Sun, X; Picelli, S; Sabirsh, A; Clausen, M; Bjursell, MK; Smith, DM; Kasper, M; Ämmälä, C; Sandberg, R
Cell metabolism, 2016, 593-607.

The heterogeneity of human CD127(+) innate lymphoid cells revealed by single-cell RNA sequencing
Björklund, ÅK; Forkel, M; Picelli, S; Konya, V; Theorell, J; Friberg, D; Sandberg, R; Mjösberg, J
Nature immunology, 2016, 451-60.

2015

Adult human and mouse ovaries lack DDX4-expressing functional oogonial stem cells
Zhang, H; Panula, S; Petropoulos, S; Edsgärd, D; Busayavalasa, K; Liu, L; Li, X; Risal, S; Shen, Y; Shao, J; Liu, M; Li, S; Zhang, D; Zhang, X; Gerner, RR; Sheikhi, M; Damdimopoulou, P; Sandberg, R; Douagi, I; Gustafsson, JÅ; Liu, L; Lanner, F; Hovatta, O; Liu, K
Nature medicine, 2015, 1116-8.

Decoding breast cancer tissue-stroma interactions using species-specific sequencing
Chivukula, IV; Ramsköld, D; Storvall, H; Anderberg, C; Jin, S; Mamaeva, V; Sahlgren, C; Pietras, K; Sandberg, R; Lendahl, U
Breast cancer research : BCR, 2015, 109-.

Genome-wide mapping of promoter-anchored interactions with close to single-enhancer resolution
Sahlén, P; Abdullayev, I; Ramsköld, D; Matskova, L; Rilakovic, N; Lötstedt, B; Albert, TJ; Lundeberg, J; Sandberg, R
Genome biology, 2015, 156-.

In Vivo Effects of Mesenchymal Stromal Cells in Two Patients With Severe Acute Respiratory Distress Syndrome
Simonson, OE; Mougiakakos, D; Heldring, N; Bassi, G; Johansson, HJ; Dalén, M; Jitschin, R; Rodin, S; Corbascio, M; El Andaloussi, S; Wiklander, OP; Nordin, JZ; Skog, J; Romain, C; Koestler, T; Hellgren-Johansson, L; Schiller, P; Joachimsson, PO; Hägglund, H; Mattsson, M; Lehtiö, J; Faridani, OR; Sandberg, R; Korsgren, O; Krampera, M; Weiss, DJ; Grinnemo, KH; Le Blanc, K
Stem cells translational medicine, 2015, 1199-213.

Novel functions and targets of miR-944 in human cervical cancer cells
Xie, H; Lee, L; Scicluna, P; Kavak, E; Larsson, C; Sandberg, R; Lui, WO
INTERNATIONAL JOURNAL OF CANCER, 2015, E230-41.

Putting cells in their place
Faridani, OR; Sandberg, R
Nature biotechnology, 2015, 490-1.

Random monoallelic expression of autosomal genes: stochastic transcription and allele-level regulation
Reinius, B; Sandberg, R
Nature reviews. Genetics, 2015, 653-64.

2014

BMP signaling and its pSMAD1/5 target genes differentially regulate hair follicle stem cell lineages
Genander, M; Cook, PJ; Ramsköld, D; Keyes, BE; Mertz, AF; Sandberg, R; Fuchs, E
Cell stem cell, 2014, 619-33.

Entering the era of single-cell transcriptomics in biology and medicine
Sandberg, R
Nature Methods, 2014, 22-4.

Full-length RNA-seq from single cells using Smart-seq2
Picelli, S; Faridani, OR; Björklund, AK; Winberg, G; Sagasser, S; Sandberg, R
Nature protocols, 2014, 171-81.

Myelodysplastic syndromes are propagated by rare and distinct human cancer stem cells in vivo
Woll, PS; Kjällquist, U; Chowdhury, O; Doolittle, H; Wedge, DC; Thongjuea, S; Erlandsson, R; Ngara, M; Anderson, K; Deng, Q; Mead, AJ; Stenson, L; Giustacchini, A; Duarte, S; Giannoulatou, E; Taylor, S; Karimi, M; Scharenberg, C; Mortera-Blanco, T; Macaulay, IC; Clark, SA; Dybedal, I; Josefsen, D; Fenaux, P; Hokland, P; Holm, MS; Cazzola, M; Malcovati, L; Tauro, S; Bowen, D; Boultwood, J; Pellagatti, A; Pimanda, JE; Unnikrishnan, A; Vyas, P; Göhring, G; Schlegelberger, B; Tobiasson, M; Kvalheim, G; Constantinescu, SN; Nerlov, C; Nilsson, L; Campbell, PJ; Sandberg, R; Papaemmanuil, E; Hellström-Lindberg, E; Linnarsson, S; Jacobsen, SE
Cancer cell, 2014, 794-808.

RNA helicase A is a downstream mediator of KIF1Bβ tumor-suppressor function in neuroblastoma
Chen, ZX; Wallis, K; Fell, SM; Sobrado, VR; Hemmer, MC; Ramsköld, D; Hellman, U; Sandberg, R; Kenchappa, RS; Martinson, T; Johnsen, JI; Kogner, P; Schlisio, S
Cancer discovery, 2014, 434-51.

Single-cell RNA-seq reveals dynamic, random monoallelic gene expression in mammalian cells
Deng, Q; Ramsköld, D; Reinius, B; Sandberg, R
Science (New York, N.Y.), 2014, 193-6.

Tn5 transposase and tagmentation procedures for massively scaled sequencing projects
Picelli, S; Björklund, AK; Reinius, B; Sagasser, S; Winberg, G; Sandberg, R
Genome research, 2014, 2033-40.

2013

A reference transcriptome and inferred proteome for the salamander Notophthalmus viridescens
Abdullayev, I; Kirkham, M; Björklund, ÅK; Simon, A; Sandberg, R
Experimental cell research, 2013, 1187-97.

Efficient and comprehensive representation of uniqueness for next-generation sequencing by minimum unique length analyses
Storvall, H; Ramsköld, D; Sandberg, R
PloS one, 2013, e53822-.

Lymphomyeloid contribution of an immune-restricted progenitor emerging prior to definitive hematopoietic stem cells
Böiers, C; Carrelha, J; Lutteropp, M; Luc, S; Green, JC; Azzoni, E; Woll, PS; Mead, AJ; Hultquist, A; Swiers, G; Perdiguero, EG; Macaulay, IC; Melchiori, L; Luis, TC; Kharazi, S; Bouriez-Jones, T; Deng, Q; Pontén, A; Atkinson, D; Jensen, CT; Sitnicka, E; Geissmann, F; Godin, I; Sandberg, R; de Bruijn, MF; Jacobsen, SE
Cell stem cell, 2013, 535-48.

Non-canonical Notch signaling activates IL-6/JAK/STAT signaling in breast tumor cells and is controlled by p53 and IKKα/IKKβ
Jin, S; Mutvei, AP; Chivukula, IV; Andersson, ER; Ramsköld, D; Sandberg, R; Lee, KL; Kronqvist, P; Mamaeva, V; Ostling, P; Mpindi, JP; Kallioniemi, O; Screpanti, I; Poellinger, L; Sahlgren, C; Lendahl, U
Oncogene, 2013, 4892-902.

Smart-seq2 for sensitive full-length transcriptome profiling in single cells
Picelli, S; Björklund, ÅK; Faridani, OR; Sagasser, S; Winberg, G; Sandberg, R
Nature methods, 2013, 1096-8.

SoxB1-driven transcriptional network underlies neural-specific interpretation of morphogen signals
Oosterveen, T; Kurdija, S; Ensterö, M; Uhde, CW; Bergsland, M; Sandberg, M; Sandberg, R; Muhr, J; Ericson, J
Proceedings of the National Academy of Sciences of the United States of America, 2013, 7330-5.

The human cap-binding complex is functionally connected to the nuclear RNA exosome
Andersen, PR; Domanski, M; Kristiansen, MS; Storvall, H; Ntini, E; Verheggen, C; Schein, A; Bunkenborg, J; Poser, I; Hallais, M; Sandberg, R; Hyman, A; LaCava, J; Rout, MP; Andersen, JS; Bertrand, E; Jensen, TH
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2013, 1367-76.

Transcription factor Nurr1 maintains fiber integrity and nuclear-encoded mitochondrial gene expression in dopamine neurons
Kadkhodaei, B; Alvarsson, A; Schintu, N; Ramsköld, D; Volakakis, N; Joodmardi, E; Yoshitake, T; Kehr, J; Decressac, M; Björklund, A; Sandberg, R; Svenningsson, P; Perlmann, T
Proceedings of the National Academy of Sciences of the United States of America, 2013, 2360-5.

2012

Abundance of female-biased and paucity of male-biased somatically expressed genes on the mouse X-chromosome
Reinius, B; Johansson, MM; Radomska, KJ; Morrow, EH; Pandey, GK; Kanduri, C; Sandberg, R; Williams, RW; Jazin, E
BMC genomics, 2012, 607-.

Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells
Ramsköld, D; Luo, S; Wang, YC; Li, R; Deng, Q; Faridani, OR; Daniels, GA; Khrebtukova, I; Loring, JF; Laurent, LC; Schroth, GP; Sandberg, R
Nature biotechnology, 2012, 777-82.

How to analyze gene expression using RNA-sequencing data
Ramsköld, D; Kavak, E; Sandberg, R
Methods in molecular biology (Clifton, N.J.), 2012, 259-74.

2011

CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing
Shukla, S; Kavak, E; Gregory, M; Imashimizu, M; Shutinoski, B; Kashlev, M; Oberdoerffer, P; Sandberg, R; Oberdoerffer, S
NATURE, 2011, 74-9.

Notch signaling: simplicity in design, versatility in function
Andersson, ER; Sandberg, R; Lendahl, U
DEVELOPMENT, 2011, 3593-612.

Sequentially acting Sox transcription factors in neural lineage development
Bergsland, M; Ramskold, D; Zaouter, C; Klum, S; Sandberg, R; Muhr, J
GENES & DEVELOPMENT, 2011, 2453-64.

Transcription Factor-Induced Lineage Selection of Stem-Cell-Derived Neural Progenitor Cells
Panman, L; Andersson, E; Alekseenko, Z; Hedlund, E; Kee, N; Mong, J; Uhde, CW; Deng, QL; Sandberg, R; Stanton, LW; Ericson, J; Perlmann, T
CELL STEM CELL, 2011, 663-75.

2010

Heterogeneity in mammalian RNA 3 ' end formation
Neilson, JR; Sandberg, R
EXPERIMENTAL CELL RESEARCH, 2010, 1357-64.

2009

An Abundance of Ubiquitously Expressed Genes Revealed by Tissue Transcriptome Sequence Data
Ramskold, D; Wang, ET; Burge, CB; Sandberg, R
PLOS COMPUTATIONAL BIOLOGY, 2009, e1000598-.

2008

Alternative isoform regulation in human tissue transcriptomes
Wang, ET; Sandberg, R; Luo, SJ; Khrebtukova, I; Zhang, L; Mayr, C; Kingsmore, SF; Schroth, GP; Burge, CB
NATURE, 2008, 470-6.

Proliferating cells express mRNAs with shortened 3 ' untranslated regions and fewer microRNA target sites
Sandberg, R; Neilson, JR; Sarma, A; Sharp, PA; Burge, CB
SCIENCE, 2008, 1643-7.

2007

Determinants of targeting by endogenous and exogenous microRNAs and siRNAs
Nielsen, CB; Shomron, N; Sandberg, R; Hornstein, E; Kitzman, J; Burge, CB
RNA, 2007, 1894-910.

Improved precision and accuracy for microarrays using updated probe set definitions
Sandberg, R; Larsson, O
BMC BIOINFORMATICS, 2007, 48-.

2006

Comparative microarray analysis
Larsson, O; Wennmalm, K; Sandberg, R
OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY, 2006, 381-97.

Lack of correct data format and comparability limits future integrative microarray research
Larsson, O; Sandberg, R
NATURE BIOTECHNOLOGY, 2006, 1322-3.

2005

Assessment of tumor characteristic gene expression in cell lines using a tissue similarity index (TSI)
Sandberg, R; Ernberg, I
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 2052-7.

Gene expression perturbation in vitro - A growing case for three-dimensional (3D) culture systems
Birgersdotter, A; Sandberg, R; Ernberg, I
SEMINARS IN CANCER BIOLOGY, 2005, 405-12.

The molecular portrait of in vitro growth by meta-analysis of gene-expression profiles
Sandberg, R; Ernberg, I
GENOME BIOLOGY, 2005, R65-.

2003

Quantifying the species-specificity in genomics signatures, synonymous codon choice, amino acid usage and G+C content
Sandberg, R; Branden, CI; Ernberg, I; Coster, J
GENE, 2003, 35-42.

Systems biology is taking off
Ehrenberg, M; Elf, J; Aurell, E; Sandberg, R; Tegner, J
GENOME RESEARCH, 2003, 2377-80.

2001

Capturing whole-genome characteristics in short sequences using a naive Bayesian classifier
Sandberg, R; Winberg, G; Branden, CI; Kaske, A; Ernberg, I; Coster, J
GENOME RESEARCH, 2001, 1404-9.

2000

Antisense PNA effects in Escherichia coli are limited by the outer-membrane LPS layer
Good, L; Sandberg, R; Larsson, O; Nielsen, PE; Wahlestedt, C
MICROBIOLOGY-SGM, 2000, 2665-2670.

Gene expression mapping of the adult mouse brain.
Sandberg, R; Yasuda, R; Carter, T; Pankratz, DG; Del Rio, J; Wodicka, L; Mayford, M; Lockhart, DJ; Barlow, C
AMERICAN JOURNAL OF MEDICAL GENETICS, 2000, 456-456.

Regional and strain-specific gene expression mapping in the adult mouse brain
Sandberg, R; Yasuda, R; Pankratz, DG; Carter, TA; Del Rio, JA; Wodicka, L; Mayford, M; Lockhart, DJ; Barlow, C
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2000, 11038-43.

© 2020 Sandberg lab at Karolinska Institutet, Stockholm, Sweden.